Atomistry » Tellurium » PDB 1el7-7zsq » 1el7
Atomistry »
  Tellurium »
    PDB 1el7-7zsq »
      1el7 »

Tellurium in PDB 1el7: Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate

Enzymatic activity of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate

All present enzymatic activity of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate:
1.5.3.1;

Protein crystallography data

The structure of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate, PDB code: 1el7 was solved by M.A.Wagner, P.Trickey, Z.-W.Chen, F.S.Mathews, M.S.Jorns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.722, 69.504, 73.465, 90.00, 94.12, 90.00
R / Rfree (%) 17.5 / 21.3

Other elements in 1el7:

The structure of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Tellurium Binding Sites:

The binding sites of Tellurium atom in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate (pdb code 1el7). This binding sites where shown within 5.0 Angstroms radius around Tellurium atom.
In total 6 binding sites of Tellurium where determined in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate, PDB code: 1el7:
Jump to Tellurium binding site number: 1; 2; 3; 4; 5; 6;

Tellurium binding site 1 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 1 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 1 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te801

b:24.8
occ:0.50
 TE3 A:MTD801 0.0 24.8 0.5
C4 A:MTD801 1.9 19.9 0.5
TE3 A:MTD801 2.0 20.1 0.5
C4 A:MTD801 2.1 19.0 0.5
C2 A:MTD801 2.1 21.8 1.0
C1 A:MTD801 2.8 26.2 1.0
O6 A:MTD801 2.9 23.6 1.0
O A:GLY344 3.1 13.9 1.0
C4 A:FAD400 3.3 14.3 1.0
C4X A:FAD400 3.4 12.6 1.0
N3 A:FAD400 3.6 13.0 1.0
C10 A:FAD400 3.7 12.7 1.0
O4 A:FAD400 3.7 15.6 1.0
N5 A:FAD400 3.8 12.5 1.0
O5 A:MTD801 4.0 28.8 1.0
C2 A:FAD400 4.0 11.7 1.0
N1 A:FAD400 4.0 12.2 1.0
CA A:HIS345 4.1 14.1 1.0
CE1 A:HIS269 4.1 16.9 1.0
CB A:HIS345 4.1 13.2 1.0
C A:GLY344 4.2 11.8 1.0
NZ A:LYS348 4.4 10.5 1.0
N10 A:FAD400 4.5 13.0 1.0
ND1 A:HIS269 4.5 23.0 1.0
C5X A:FAD400 4.6 14.5 1.0
N A:HIS345 4.6 13.4 1.0
NH2 A:ARG52 4.7 18.0 1.0
NE2 A:HIS269 4.8 20.9 1.0
O2 A:FAD400 4.8 13.6 1.0
SD A:MET245 4.9 22.3 1.0
C9A A:FAD400 4.9 13.9 1.0

Tellurium binding site 2 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 2 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 2 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te801

b:20.1
occ:0.50
 TE3 A:MTD801 0.0 20.1 0.5
TE3 A:MTD801 2.0 24.8 0.5
C2 A:MTD801 2.1 21.8 1.0
C4 A:MTD801 2.1 19.9 0.5
C4 A:MTD801 2.4 19.0 0.5
C1 A:MTD801 2.9 26.2 1.0
SD A:MET245 3.4 22.3 1.0
O6 A:MTD801 3.5 23.6 1.0
CE1 A:HIS269 3.6 16.9 1.0
O5 A:MTD801 3.6 28.8 1.0
ND1 A:HIS269 3.6 23.0 1.0
CE A:MET245 3.8 22.7 1.0
NE2 A:HIS269 3.8 20.9 1.0
CD1 A:TYR254 3.9 17.8 1.0
CG A:HIS269 3.9 20.8 1.0
CG A:TYR254 3.9 16.3 1.0
CD2 A:HIS269 4.1 19.3 1.0
CB A:TYR254 4.1 14.2 1.0
CG A:MET245 4.3 15.9 1.0
O A:GLY344 4.4 13.9 1.0
CE1 A:TYR254 4.6 13.6 1.0
CD2 A:TYR254 4.6 14.5 1.0
CB A:HIS269 4.7 17.1 1.0
NH2 A:ARG52 4.7 18.0 1.0
O4 A:FAD400 4.9 15.6 1.0
C4 A:FAD400 4.9 14.3 1.0
OH A:TYR317 5.0 14.2 1.0

Tellurium binding site 3 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 3 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 3 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te805

b:24.7
occ:0.21
 SG A:CYS262 3.0 40.9 1.0
CA A:CYS262 3.7 23.7 1.0
CB A:CYS262 3.8 31.5 1.0
O A:HOH1163 4.1 33.4 1.0
O A:GLY261 4.3 25.1 1.0
N A:CYS262 4.4 23.5 1.0
NZ A:LYS310 4.4 28.2 1.0
CE A:LYS310 4.5 26.5 1.0
C A:GLY261 4.6 22.7 1.0
O A:HOH864 4.8 23.3 1.0
C A:CYS262 4.8 23.2 1.0
O A:CYS262 5.0 21.5 1.0
O A:GLY260 5.0 17.3 1.0

Tellurium binding site 4 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 4 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 4 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te811

b:24.2
occ:0.50
 TE3 B:MTD811 0.0 24.2 0.5
C4 B:MTD811 2.0 20.2 0.5
C4 B:MTD811 2.0 19.5 0.5
C2 B:MTD811 2.1 21.2 1.0
TE3 B:MTD811 2.1 22.8 0.5
C1 B:MTD811 2.9 25.6 1.0
O6 B:MTD811 2.9 21.9 1.0
O B:GLY344 3.0 14.4 1.0
C4 B:FAD400 3.4 13.6 1.0
C4X B:FAD400 3.4 14.1 1.0
N3 B:FAD400 3.6 13.5 1.0
C10 B:FAD400 3.7 14.5 1.0
O4 B:FAD400 3.8 14.1 1.0
N5 B:FAD400 3.9 15.0 1.0
C2 B:FAD400 3.9 14.2 1.0
N1 B:FAD400 4.0 12.3 1.0
CA B:HIS345 4.0 12.7 1.0
O5 B:MTD811 4.0 30.4 1.0
CB B:HIS345 4.0 11.7 1.0
CE1 B:HIS269 4.1 16.8 1.0
C B:GLY344 4.1 11.8 1.0
NZ B:LYS348 4.4 12.9 1.0
N10 B:FAD400 4.5 13.9 1.0
ND1 B:HIS269 4.5 17.7 1.0
N B:HIS345 4.5 14.8 1.0
C5X B:FAD400 4.6 14.6 1.0
NH2 B:ARG52 4.6 18.3 1.0
O2 B:FAD400 4.7 14.3 1.0
NE2 B:HIS269 4.7 14.4 1.0
SD B:MET245 4.9 21.0 1.0
C9A B:FAD400 4.9 14.9 1.0

Tellurium binding site 5 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 5 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 5 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te811

b:22.8
occ:0.50
 TE3 B:MTD811 0.0 22.8 0.5
C2 B:MTD811 2.1 21.2 1.0
C4 B:MTD811 2.1 20.2 0.5
TE3 B:MTD811 2.1 24.2 0.5
C4 B:MTD811 2.3 19.5 0.5
C1 B:MTD811 2.9 25.6 1.0
SD B:MET245 3.4 21.0 1.0
O5 B:MTD811 3.5 30.4 1.0
CE1 B:HIS269 3.5 16.8 1.0
ND1 B:HIS269 3.5 17.7 1.0
O6 B:MTD811 3.6 21.9 1.0
NE2 B:HIS269 3.8 14.4 1.0
CE B:MET245 3.8 23.3 1.0
CD1 B:TYR254 3.9 15.7 1.0
CG B:HIS269 3.9 16.5 1.0
CG B:TYR254 3.9 16.3 1.0
CD2 B:HIS269 4.1 16.0 1.0
CB B:TYR254 4.1 14.0 1.0
CG B:MET245 4.4 17.6 1.0
O B:GLY344 4.4 14.4 1.0
CE1 B:TYR254 4.5 19.0 1.0
CD2 B:TYR254 4.6 16.2 1.0
CB B:HIS269 4.6 12.2 1.0
NH2 B:ARG52 4.7 18.3 1.0
OH B:TYR317 4.9 14.9 1.0
C4 B:FAD400 5.0 13.6 1.0
O4 B:FAD400 5.0 14.1 1.0

Tellurium binding site 6 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 6 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 6 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te815

b:25.5
occ:0.22
 SG B:CYS262 2.9 32.9 1.0
CA B:CYS262 3.7 21.9 1.0
CB B:CYS262 3.8 28.6 1.0
O B:HOH1203 4.1 44.9 1.0
O B:GLY261 4.2 20.7 1.0
N B:CYS262 4.3 20.5 1.0
NZ B:LYS310 4.5 23.0 1.0
C B:GLY261 4.5 21.9 1.0
CE B:LYS310 4.5 22.3 1.0
C B:CYS262 4.8 19.2 1.0
O B:HOH881 4.8 24.6 1.0
O B:GLY260 4.8 17.2 1.0
O B:HOH1047 4.9 43.2 1.0
O B:CYS262 5.0 18.4 1.0

Reference:

M.A.Wagner, P.Trickey, Z.W.Chen, F.S.Mathews, M.S.Jorns. Monomeric Sarcosine Oxidase: 1. Flavin Reactivity and Active Site Binding Determinants. Biochemistry V. 39 8813 2000.
ISSN: ISSN 0006-2960
PubMed: 10913292
DOI: 10.1021/BI000349Z
Page generated: Mon Jan 25 16:05:13 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy