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Tellurium in PDB 1el7: Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate

Enzymatic activity of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate

All present enzymatic activity of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate:
1.5.3.1;

Protein crystallography data

The structure of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate, PDB code: 1el7 was solved by M.A.Wagner, P.Trickey, Z.-W.Chen, F.S.Mathews, M.S.Jorns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.722, 69.504, 73.465, 90.00, 94.12, 90.00
R / Rfree (%) 17.5 / 21.3

Other elements in 1el7:

The structure of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Tellurium Binding Sites:

The binding sites of Tellurium atom in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate (pdb code 1el7). This binding sites where shown within 5.0 Angstroms radius around Tellurium atom.
In total 6 binding sites of Tellurium where determined in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate, PDB code: 1el7:
Jump to Tellurium binding site number: 1; 2; 3; 4; 5; 6;

Tellurium binding site 1 out of 6 in 1el7

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Tellurium binding site 1 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 1 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te801

b:24.8
occ:0.50
 TE3 A:MTD801 0.0 24.8 0.5
C4 A:MTD801 1.9 19.9 0.5
TE3 A:MTD801 2.0 20.1 0.5
C4 A:MTD801 2.1 19.0 0.5
C2 A:MTD801 2.1 21.8 1.0
C1 A:MTD801 2.8 26.2 1.0
O6 A:MTD801 2.9 23.6 1.0
O A:GLY344 3.1 13.9 1.0
C4 A:FAD400 3.3 14.3 1.0
C4X A:FAD400 3.4 12.6 1.0
N3 A:FAD400 3.6 13.0 1.0
C10 A:FAD400 3.7 12.7 1.0
O4 A:FAD400 3.7 15.6 1.0
N5 A:FAD400 3.8 12.5 1.0
O5 A:MTD801 4.0 28.8 1.0
C2 A:FAD400 4.0 11.7 1.0
N1 A:FAD400 4.0 12.2 1.0
CA A:HIS345 4.1 14.1 1.0
CE1 A:HIS269 4.1 16.9 1.0
CB A:HIS345 4.1 13.2 1.0
C A:GLY344 4.2 11.8 1.0
NZ A:LYS348 4.4 10.5 1.0
N10 A:FAD400 4.5 13.0 1.0
ND1 A:HIS269 4.5 23.0 1.0
C5X A:FAD400 4.6 14.5 1.0
N A:HIS345 4.6 13.4 1.0
NH2 A:ARG52 4.7 18.0 1.0
NE2 A:HIS269 4.8 20.9 1.0
O2 A:FAD400 4.8 13.6 1.0
SD A:MET245 4.9 22.3 1.0
C9A A:FAD400 4.9 13.9 1.0

Tellurium binding site 2 out of 6 in 1el7

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Tellurium binding site 2 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 2 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te801

b:20.1
occ:0.50
 TE3 A:MTD801 0.0 20.1 0.5
TE3 A:MTD801 2.0 24.8 0.5
C2 A:MTD801 2.1 21.8 1.0
C4 A:MTD801 2.1 19.9 0.5
C4 A:MTD801 2.4 19.0 0.5
C1 A:MTD801 2.9 26.2 1.0
SD A:MET245 3.4 22.3 1.0
O6 A:MTD801 3.5 23.6 1.0
CE1 A:HIS269 3.6 16.9 1.0
O5 A:MTD801 3.6 28.8 1.0
ND1 A:HIS269 3.6 23.0 1.0
CE A:MET245 3.8 22.7 1.0
NE2 A:HIS269 3.8 20.9 1.0
CD1 A:TYR254 3.9 17.8 1.0
CG A:HIS269 3.9 20.8 1.0
CG A:TYR254 3.9 16.3 1.0
CD2 A:HIS269 4.1 19.3 1.0
CB A:TYR254 4.1 14.2 1.0
CG A:MET245 4.3 15.9 1.0
O A:GLY344 4.4 13.9 1.0
CE1 A:TYR254 4.6 13.6 1.0
CD2 A:TYR254 4.6 14.5 1.0
CB A:HIS269 4.7 17.1 1.0
NH2 A:ARG52 4.7 18.0 1.0
O4 A:FAD400 4.9 15.6 1.0
C4 A:FAD400 4.9 14.3 1.0
OH A:TYR317 5.0 14.2 1.0

Tellurium binding site 3 out of 6 in 1el7

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Tellurium binding site 3 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 3 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te805

b:24.7
occ:0.21
 SG A:CYS262 3.0 40.9 1.0
CA A:CYS262 3.7 23.7 1.0
CB A:CYS262 3.8 31.5 1.0
O A:HOH1163 4.1 33.4 1.0
O A:GLY261 4.3 25.1 1.0
N A:CYS262 4.4 23.5 1.0
NZ A:LYS310 4.4 28.2 1.0
CE A:LYS310 4.5 26.5 1.0
C A:GLY261 4.6 22.7 1.0
O A:HOH864 4.8 23.3 1.0
C A:CYS262 4.8 23.2 1.0
O A:CYS262 5.0 21.5 1.0
O A:GLY260 5.0 17.3 1.0

Tellurium binding site 4 out of 6 in 1el7

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Tellurium binding site 4 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 4 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te811

b:24.2
occ:0.50
 TE3 B:MTD811 0.0 24.2 0.5
C4 B:MTD811 2.0 20.2 0.5
C4 B:MTD811 2.0 19.5 0.5
C2 B:MTD811 2.1 21.2 1.0
TE3 B:MTD811 2.1 22.8 0.5
C1 B:MTD811 2.9 25.6 1.0
O6 B:MTD811 2.9 21.9 1.0
O B:GLY344 3.0 14.4 1.0
C4 B:FAD400 3.4 13.6 1.0
C4X B:FAD400 3.4 14.1 1.0
N3 B:FAD400 3.6 13.5 1.0
C10 B:FAD400 3.7 14.5 1.0
O4 B:FAD400 3.8 14.1 1.0
N5 B:FAD400 3.9 15.0 1.0
C2 B:FAD400 3.9 14.2 1.0
N1 B:FAD400 4.0 12.3 1.0
CA B:HIS345 4.0 12.7 1.0
O5 B:MTD811 4.0 30.4 1.0
CB B:HIS345 4.0 11.7 1.0
CE1 B:HIS269 4.1 16.8 1.0
C B:GLY344 4.1 11.8 1.0
NZ B:LYS348 4.4 12.9 1.0
N10 B:FAD400 4.5 13.9 1.0
ND1 B:HIS269 4.5 17.7 1.0
N B:HIS345 4.5 14.8 1.0
C5X B:FAD400 4.6 14.6 1.0
NH2 B:ARG52 4.6 18.3 1.0
O2 B:FAD400 4.7 14.3 1.0
NE2 B:HIS269 4.7 14.4 1.0
SD B:MET245 4.9 21.0 1.0
C9A B:FAD400 4.9 14.9 1.0

Tellurium binding site 5 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 5 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 5 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te811

b:22.8
occ:0.50
 TE3 B:MTD811 0.0 22.8 0.5
C2 B:MTD811 2.1 21.2 1.0
C4 B:MTD811 2.1 20.2 0.5
TE3 B:MTD811 2.1 24.2 0.5
C4 B:MTD811 2.3 19.5 0.5
C1 B:MTD811 2.9 25.6 1.0
SD B:MET245 3.4 21.0 1.0
O5 B:MTD811 3.5 30.4 1.0
CE1 B:HIS269 3.5 16.8 1.0
ND1 B:HIS269 3.5 17.7 1.0
O6 B:MTD811 3.6 21.9 1.0
NE2 B:HIS269 3.8 14.4 1.0
CE B:MET245 3.8 23.3 1.0
CD1 B:TYR254 3.9 15.7 1.0
CG B:HIS269 3.9 16.5 1.0
CG B:TYR254 3.9 16.3 1.0
CD2 B:HIS269 4.1 16.0 1.0
CB B:TYR254 4.1 14.0 1.0
CG B:MET245 4.4 17.6 1.0
O B:GLY344 4.4 14.4 1.0
CE1 B:TYR254 4.5 19.0 1.0
CD2 B:TYR254 4.6 16.2 1.0
CB B:HIS269 4.6 12.2 1.0
NH2 B:ARG52 4.7 18.3 1.0
OH B:TYR317 4.9 14.9 1.0
C4 B:FAD400 5.0 13.6 1.0
O4 B:FAD400 5.0 14.1 1.0

Tellurium binding site 6 out of 6 in 1el7

Go back to Tellurium Binding Sites List in 1el7
Tellurium binding site 6 out of 6 in the Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 6 of Complex of Monomeric Sarcosine Oxidase with the Inhibitor [Methytelluro]Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te815

b:25.5
occ:0.22
 SG B:CYS262 2.9 32.9 1.0
CA B:CYS262 3.7 21.9 1.0
CB B:CYS262 3.8 28.6 1.0
O B:HOH1203 4.1 44.9 1.0
O B:GLY261 4.2 20.7 1.0
N B:CYS262 4.3 20.5 1.0
NZ B:LYS310 4.5 23.0 1.0
C B:GLY261 4.5 21.9 1.0
CE B:LYS310 4.5 22.3 1.0
C B:CYS262 4.8 19.2 1.0
O B:HOH881 4.8 24.6 1.0
O B:GLY260 4.8 17.2 1.0
O B:HOH1047 4.9 43.2 1.0
O B:CYS262 5.0 18.4 1.0

Reference:

M.A.Wagner, P.Trickey, Z.W.Chen, F.S.Mathews, M.S.Jorns. Monomeric Sarcosine Oxidase: 1. Flavin Reactivity and Active Site Binding Determinants. Biochemistry V. 39 8813 2000.
ISSN: ISSN 0006-2960
PubMed: 10913292
DOI: 10.1021/BI000349Z
Page generated: Fri Oct 11 08:57:50 2024

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