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Tellurium in PDB 1tdr: Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase

Enzymatic activity of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase

All present enzymatic activity of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase:
1.5.1.3;

Protein crystallography data

The structure of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase, PDB code: 1tdr was solved by K.Lewinski, L.Lebioda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.00 / 2.50
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 93.000, 93.000, 74.400, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1tdr:

The structure of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Tellurium Binding Sites:

The binding sites of Tellurium atom in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase (pdb code 1tdr). This binding sites where shown within 5.0 Angstroms radius around Tellurium atom.
In total 4 binding sites of Tellurium where determined in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase, PDB code: 1tdr:
Jump to Tellurium binding site number: 1; 2; 3; 4;

Tellurium binding site 1 out of 4 in 1tdr

Go back to Tellurium Binding Sites List in 1tdr
Tellurium binding site 1 out of 4 in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 1 of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te173

b:32.8
occ:0.48
 SD A:MET42 0.5 21.6 0.1
CE A:MET42 2.0 18.9 1.0
CG A:MET42 2.3 22.5 1.0
CB A:MET42 3.2 23.3 1.0
CD1 A:ILE50 3.8 23.6 1.0
CA A:TRP47 3.9 30.9 1.0
CE3 A:TRP47 4.0 33.7 1.0
CB A:TRP47 4.0 31.4 1.0
CD1 A:ILE61 4.1 34.6 1.0
N A:TRP47 4.1 29.8 1.0
CD1 A:ILE94 4.2 21.8 1.0
CA A:MET42 4.5 25.0 1.0
CG2 A:THR46 4.5 23.6 1.0
C A:THR46 4.6 29.4 1.0
O A:GLY43 4.7 27.7 1.0
CD2 A:TRP47 4.7 33.2 1.0
CG1 A:ILE50 4.7 24.4 1.0
CG A:TRP47 4.8 32.2 1.0
CG1 A:ILE94 4.8 22.9 1.0
N A:MET42 4.9 25.2 1.0
CB A:THR46 4.9 26.7 1.0
CZ3 A:TRP47 4.9 32.7 1.0
C A:MET42 4.9 25.8 1.0

Tellurium binding site 2 out of 4 in 1tdr

Go back to Tellurium Binding Sites List in 1tdr
Tellurium binding site 2 out of 4 in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 2 of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te174

b:31.0
occ:0.46
 SD A:MET92 0.5 24.8 0.1
CE A:MET92 1.4 21.9 1.0
CG A:MET92 1.9 26.3 1.0
CB A:MET92 2.8 27.4 1.0
CA A:MET92 3.6 28.3 1.0
CD A:GLU90 3.7 33.7 1.0
OE2 A:GLU90 3.7 34.3 1.0
CB A:SER3 3.9 27.7 1.0
CD A:LYS38 3.9 19.3 1.0
CG A:GLU90 3.9 33.4 1.0
O A:ASN34 3.9 18.8 1.0
OE1 A:GLU90 4.0 33.3 1.0
N A:MET92 4.1 29.3 1.0
CE1 A:TYR111 4.2 24.1 1.0
NZ A:LYS38 4.2 19.4 1.0
O A:ILE91 4.3 30.7 1.0
C A:ILE91 4.3 30.8 1.0
OG A:SER3 4.4 26.8 1.0
CZ A:TYR111 4.5 25.2 1.0
OH A:TYR111 4.6 26.9 1.0
CE A:LYS38 4.6 19.6 1.0
CB A:GLU90 4.8 34.3 1.0
CD1 A:TYR111 4.8 24.5 1.0
C A:MET92 4.9 27.5 1.0
CA A:SER3 4.9 27.0 1.0
C A:ASN34 5.0 19.9 1.0
O A:SER3 5.0 26.6 1.0

Tellurium binding site 3 out of 4 in 1tdr

Go back to Tellurium Binding Sites List in 1tdr
Tellurium binding site 3 out of 4 in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 3 of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te173

b:38.2
occ:0.57
 SD B:MET42 0.2 26.6 0.1
CE B:MET42 1.9 25.4 1.0
CG B:MET42 1.9 26.9 1.0
CB B:MET42 2.9 27.7 1.0
CA B:TRP47 3.7 37.2 1.0
CD1 B:ILE50 3.9 35.9 1.0
CB B:TRP47 3.9 37.2 1.0
CE3 B:TRP47 3.9 39.4 1.0
N B:TRP47 4.1 35.2 1.0
CA B:MET42 4.3 27.9 1.0
CD1 B:ILE94 4.4 16.7 1.0
CG2 B:THR46 4.5 31.7 1.0
O B:GLY43 4.5 31.3 1.0
C B:THR46 4.5 35.2 1.0
CD2 B:TRP47 4.6 39.1 1.0
CG1 B:ILE50 4.6 36.6 1.0
CD1 B:ILE61 4.6 32.7 1.0
OD1 B:ASN59 4.7 29.5 1.0
CG B:TRP47 4.7 38.7 1.0
N B:MET42 4.7 26.0 1.0
O B:THR46 4.7 33.7 1.0
CG1 B:ILE61 4.8 33.1 1.0
C B:MET42 4.8 28.4 1.0
CG1 B:ILE94 4.9 18.8 1.0
CZ3 B:TRP47 4.9 39.8 1.0
CB B:THR46 5.0 33.6 1.0
O B:ILE60 5.0 31.9 1.0

Tellurium binding site 4 out of 4 in 1tdr

Go back to Tellurium Binding Sites List in 1tdr
Tellurium binding site 4 out of 4 in the Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 4 of Expression, Characterization, and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te174

b:29.4
occ:0.48
 SD B:MET92 0.5 19.1 0.1
CE B:MET92 1.4 17.2 1.0
CG B:MET92 2.2 19.7 1.0
CB B:MET92 3.1 21.9 1.0
CA B:MET92 3.5 23.6 1.0
CB B:SER3 3.7 25.1 1.0
OE2 B:GLU90 3.8 30.7 1.0
O B:ASN34 3.8 20.7 1.0
CD B:GLU90 3.8 30.4 1.0
CG B:GLU90 4.0 29.9 1.0
N B:MET92 4.0 24.6 1.0
CE1 B:TYR111 4.3 19.8 1.0
O B:ILE91 4.3 25.8 1.0
OE1 B:GLU90 4.3 31.1 1.0
C B:ILE91 4.3 26.1 1.0
NZ B:LYS38 4.3 17.5 1.0
OG B:SER3 4.5 25.8 1.0
CE B:LYS38 4.6 18.1 1.0
CZ B:TYR111 4.7 19.8 1.0
OH B:TYR111 4.7 23.2 1.0
O B:SER3 4.7 23.5 1.0
CD B:LYS38 4.7 19.5 1.0
CA B:SER3 4.8 23.8 1.0
CD1 B:TYR111 4.8 19.1 1.0
C B:MET92 4.8 23.6 1.0
C B:SER3 4.9 23.1 1.0
C B:ASN34 4.9 20.8 1.0

Reference:

J.O.Boles, K.Lewinski, M.G.Kunckle, M.Hatada, L.Lebioda, R.B.Dunlap, J.D.Odom. Expression, Characterization and Crystallographic Analysis of Telluromethionyl Dihydrofolate Reductase. Acta Crystallogr.,Sect.D V. 51 731 1995.
ISSN: ISSN 0907-4449
PubMed: 15299803
DOI: 10.1107/S0907444995001156
Page generated: Fri Oct 11 08:57:49 2024

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