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Tellurium in PDB 4z12: Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)

Protein crystallography data

The structure of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI), PDB code: 4z12 was solved by C.Molitor, S.G.Mauracher, A.Rompel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.14 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.990, 110.410, 94.990, 90.00, 95.76, 90.00
R / Rfree (%) 17.2 / 20.5

Other elements in 4z12:

The structure of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) also contains other interesting chemical elements:

Tungsten (W) 19 atoms
Copper (Cu) 4 atoms

Tellurium Binding Sites:

The binding sites of Tellurium atom in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) (pdb code 4z12). This binding sites where shown within 5.0 Angstroms radius around Tellurium atom.
In total 3 binding sites of Tellurium where determined in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI), PDB code: 4z12:
Jump to Tellurium binding site number: 1; 2; 3;

Tellurium binding site 1 out of 3 in 4z12

Go back to Tellurium Binding Sites List in 4z12
Tellurium binding site 1 out of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 1 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te606

b:46.3
occ:0.68
TE1 A:TEW606 0.0 46.3 0.7
O12 A:TEW606 1.8 35.6 0.7
O1 A:TEW606 1.9 0.3 0.7
O11 A:TEW606 1.9 54.7 0.7
O7 A:TEW606 1.9 41.4 0.7
O13 A:TEW606 1.9 0.2 0.7
O2 A:TEW606 1.9 0.7 0.7
W2 A:TEW606 3.2 44.9 0.7
HZ2 A:LYS62 3.2 89.9 1.0
HZ3 A:LYS62 3.2 89.9 1.0
W6 A:TEW606 3.3 43.6 0.7
O3 A:TEW606 3.3 28.3 0.7
HZ3 A:LYS352 3.3 87.5 1.0
W1 A:TEW606 3.3 46.4 0.7
W3 A:TEW606 3.3 46.8 0.7
O20 A:TEW606 3.4 52.8 0.7
O14 A:TEW606 3.4 0.8 0.7
O10 A:TEW606 3.4 93.5 0.7
O4 A:TEW606 3.6 52.5 0.7
NZ A:LYS62 3.6 74.9 1.0
W5 A:TEW606 3.7 38.0 0.7
W4 A:TEW606 3.8 37.8 0.7
OE1 A:GLU157 3.8 60.9 1.0
HZ1 A:LYS352 3.8 87.5 1.0
OE2 A:GLU157 4.0 61.8 1.0
NZ A:LYS352 4.0 72.9 1.0
HZ3 A:LYS159 4.0 97.9 1.0
CD A:GLU157 4.1 58.8 1.0
HZ1 A:LYS62 4.1 89.9 1.0
O18 A:TEW606 4.3 0.9 0.7
O21 A:TEW606 4.4 33.2 0.7
O8 A:TEW606 4.4 56.1 0.7
O A:HOH785 4.5 44.0 1.0
O23 A:TEW606 4.5 75.8 0.7
O9 A:TEW606 4.5 0.5 0.7
O5 A:TEW606 4.5 44.6 0.7
O31 A:TEW606 4.5 58.1 0.7
HE3 A:LYS352 4.6 85.3 1.0
O16 A:TEW606 4.6 63.5 0.7
HZ2 A:LYS352 4.6 87.5 1.0
O6 A:TEW606 4.6 38.9 0.7
O15 A:TEW606 4.6 48.8 0.7
HE2 A:LYS62 4.7 88.3 1.0
O A:HOH794 4.8 40.7 1.0
O A:HOH761 4.8 62.1 1.0
CE A:LYS62 4.8 73.6 1.0
HD3 A:LYS159 4.9 82.3 1.0
O17 A:TEW606 4.9 54.7 0.7
CE A:LYS352 4.9 71.1 1.0
NZ A:LYS159 4.9 81.6 1.0

Tellurium binding site 2 out of 3 in 4z12

Go back to Tellurium Binding Sites List in 4z12
Tellurium binding site 2 out of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 2 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Te607

b:0.9
occ:0.69
TE1 A:TEW607 0.0 0.9 0.7
O11 A:TEW607 1.9 0.8 0.7
O1 A:TEW607 1.9 0.6 0.7
O7 A:TEW607 1.9 0.9 0.7
O13 A:TEW607 1.9 0.8 0.7
O12 A:TEW607 1.9 0.6 0.7
O2 A:TEW607 1.9 0.3 0.7
W2 A:TEW607 3.3 0.1 0.7
W6 A:TEW607 3.3 0.1 0.7
W1 A:TEW607 3.3 0.1 0.7
W5 A:TEW607 3.3 0.9 0.7
W4 A:TEW607 3.3 0.3 0.7
W3 A:TEW607 3.3 0.6 0.7
O10 A:TEW607 3.4 0.5 0.7
O14 A:TEW607 3.4 0.3 0.7
O20 A:TEW607 3.4 0.9 0.7
O3 A:TEW607 3.4 0.7 0.7
O17 A:TEW607 3.4 0.8 0.7
O4 A:TEW607 3.4 0.4 0.7
O A:HOH759 3.9 61.9 1.0
HZ1 A:LYS53 4.0 0.6 1.0
O8 A:TEW607 4.5 0.6 0.7
O23 A:TEW607 4.5 0.5 0.7
O22 A:TEW607 4.5 0.8 0.7
O6 A:TEW607 4.5 0.7 0.7
O19 A:TEW607 4.5 0.5 0.7
O16 A:TEW607 4.5 0.1 0.7
O5 A:TEW607 4.5 0.6 0.7
O31 A:TEW607 4.5 0.7 0.7
O9 A:TEW607 4.5 0.4 0.7
O21 A:TEW607 4.6 0.5 0.7
O15 A:TEW607 4.6 0.2 0.7
O18 A:TEW607 4.6 0.1 0.7
HZ3 A:LYS53 4.7 0.6 1.0
NZ A:LYS53 4.8 0.3 1.0

Tellurium binding site 3 out of 3 in 4z12

Go back to Tellurium Binding Sites List in 4z12
Tellurium binding site 3 out of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Tellurium with other atoms in the Te binding site number 3 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Te609

b:0.9
occ:0.67
W B:W610 2.1 0.2 0.7
W A:W608 3.1 0.8 0.7
W B:W606 3.2 0.0 0.7
W B:W605 3.3 0.7 0.7
W B:W607 3.3 0.8 0.7
HZ3 B:LYS352 3.5 0.3 1.0
W B:W604 3.7 0.4 0.7
O B:HOH909 3.7 0.8 1.0
HZ1 B:LYS352 4.1 0.3 1.0
NZ B:LYS352 4.2 0.4 1.0
HD3 B:LYS159 4.2 89.1 1.0
W B:W608 4.2 0.7 0.7
HD2 B:LYS159 4.6 89.1 1.0
HE2 B:LYS352 4.7 0.5 1.0
HZ2 B:LYS352 4.8 0.3 1.0
CD B:LYS159 4.9 74.3 1.0
O B:HOH922 4.9 59.7 1.0

Reference:

C.Molitor, S.G.Mauracher, A.Rompel. Aurone Synthase Is A Catechol Oxidase with Hydroxylase Activity and Provides Insights Into the Mechanism of Plant Polyphenol Oxidases. Proc.Natl.Acad.Sci.Usa V. 113 E1806 2016.
ISSN: ESSN 1091-6490
PubMed: 26976571
DOI: 10.1073/PNAS.1523575113
Page generated: Wed Dec 16 02:27:37 2020

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