Tellurium in PDB 4z12: Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)
Protein crystallography data
The structure of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI), PDB code: 4z12
was solved by
C.Molitor,
S.G.Mauracher,
A.Rompel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.14 /
1.85
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.990,
110.410,
94.990,
90.00,
95.76,
90.00
|
R / Rfree (%)
|
17.2 /
20.5
|
Other elements in 4z12:
The structure of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) also contains other interesting chemical elements:
Tellurium Binding Sites:
The binding sites of Tellurium atom in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)
(pdb code 4z12). This binding sites where shown within
5.0 Angstroms radius around Tellurium atom.
In total 3 binding sites of Tellurium where determined in the
Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI), PDB code: 4z12:
Jump to Tellurium binding site number:
1;
2;
3;
Tellurium binding site 1 out
of 3 in 4z12
Go back to
Tellurium Binding Sites List in 4z12
Tellurium binding site 1 out
of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 1 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te606
b:46.3
occ:0.68
|
TE1
|
A:TEW606
|
0.0
|
46.3
|
0.7
|
O12
|
A:TEW606
|
1.8
|
35.6
|
0.7
|
O1
|
A:TEW606
|
1.9
|
0.3
|
0.7
|
O11
|
A:TEW606
|
1.9
|
54.7
|
0.7
|
O7
|
A:TEW606
|
1.9
|
41.4
|
0.7
|
O13
|
A:TEW606
|
1.9
|
0.2
|
0.7
|
O2
|
A:TEW606
|
1.9
|
0.7
|
0.7
|
W2
|
A:TEW606
|
3.2
|
44.9
|
0.7
|
HZ2
|
A:LYS62
|
3.2
|
89.9
|
1.0
|
HZ3
|
A:LYS62
|
3.2
|
89.9
|
1.0
|
W6
|
A:TEW606
|
3.3
|
43.6
|
0.7
|
O3
|
A:TEW606
|
3.3
|
28.3
|
0.7
|
HZ3
|
A:LYS352
|
3.3
|
87.5
|
1.0
|
W1
|
A:TEW606
|
3.3
|
46.4
|
0.7
|
W3
|
A:TEW606
|
3.3
|
46.8
|
0.7
|
O20
|
A:TEW606
|
3.4
|
52.8
|
0.7
|
O14
|
A:TEW606
|
3.4
|
0.8
|
0.7
|
O10
|
A:TEW606
|
3.4
|
93.5
|
0.7
|
O4
|
A:TEW606
|
3.6
|
52.5
|
0.7
|
NZ
|
A:LYS62
|
3.6
|
74.9
|
1.0
|
W5
|
A:TEW606
|
3.7
|
38.0
|
0.7
|
W4
|
A:TEW606
|
3.8
|
37.8
|
0.7
|
OE1
|
A:GLU157
|
3.8
|
60.9
|
1.0
|
HZ1
|
A:LYS352
|
3.8
|
87.5
|
1.0
|
OE2
|
A:GLU157
|
4.0
|
61.8
|
1.0
|
NZ
|
A:LYS352
|
4.0
|
72.9
|
1.0
|
HZ3
|
A:LYS159
|
4.0
|
97.9
|
1.0
|
CD
|
A:GLU157
|
4.1
|
58.8
|
1.0
|
HZ1
|
A:LYS62
|
4.1
|
89.9
|
1.0
|
O18
|
A:TEW606
|
4.3
|
0.9
|
0.7
|
O21
|
A:TEW606
|
4.4
|
33.2
|
0.7
|
O8
|
A:TEW606
|
4.4
|
56.1
|
0.7
|
O
|
A:HOH785
|
4.5
|
44.0
|
1.0
|
O23
|
A:TEW606
|
4.5
|
75.8
|
0.7
|
O9
|
A:TEW606
|
4.5
|
0.5
|
0.7
|
O5
|
A:TEW606
|
4.5
|
44.6
|
0.7
|
O31
|
A:TEW606
|
4.5
|
58.1
|
0.7
|
HE3
|
A:LYS352
|
4.6
|
85.3
|
1.0
|
O16
|
A:TEW606
|
4.6
|
63.5
|
0.7
|
HZ2
|
A:LYS352
|
4.6
|
87.5
|
1.0
|
O6
|
A:TEW606
|
4.6
|
38.9
|
0.7
|
O15
|
A:TEW606
|
4.6
|
48.8
|
0.7
|
HE2
|
A:LYS62
|
4.7
|
88.3
|
1.0
|
O
|
A:HOH794
|
4.8
|
40.7
|
1.0
|
O
|
A:HOH761
|
4.8
|
62.1
|
1.0
|
CE
|
A:LYS62
|
4.8
|
73.6
|
1.0
|
HD3
|
A:LYS159
|
4.9
|
82.3
|
1.0
|
O17
|
A:TEW606
|
4.9
|
54.7
|
0.7
|
CE
|
A:LYS352
|
4.9
|
71.1
|
1.0
|
NZ
|
A:LYS159
|
4.9
|
81.6
|
1.0
|
|
Tellurium binding site 2 out
of 3 in 4z12
Go back to
Tellurium Binding Sites List in 4z12
Tellurium binding site 2 out
of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 2 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te607
b:0.9
occ:0.69
|
TE1
|
A:TEW607
|
0.0
|
0.9
|
0.7
|
O11
|
A:TEW607
|
1.9
|
0.8
|
0.7
|
O1
|
A:TEW607
|
1.9
|
0.6
|
0.7
|
O7
|
A:TEW607
|
1.9
|
0.9
|
0.7
|
O13
|
A:TEW607
|
1.9
|
0.8
|
0.7
|
O12
|
A:TEW607
|
1.9
|
0.6
|
0.7
|
O2
|
A:TEW607
|
1.9
|
0.3
|
0.7
|
W2
|
A:TEW607
|
3.3
|
0.1
|
0.7
|
W6
|
A:TEW607
|
3.3
|
0.1
|
0.7
|
W1
|
A:TEW607
|
3.3
|
0.1
|
0.7
|
W5
|
A:TEW607
|
3.3
|
0.9
|
0.7
|
W4
|
A:TEW607
|
3.3
|
0.3
|
0.7
|
W3
|
A:TEW607
|
3.3
|
0.6
|
0.7
|
O10
|
A:TEW607
|
3.4
|
0.5
|
0.7
|
O14
|
A:TEW607
|
3.4
|
0.3
|
0.7
|
O20
|
A:TEW607
|
3.4
|
0.9
|
0.7
|
O3
|
A:TEW607
|
3.4
|
0.7
|
0.7
|
O17
|
A:TEW607
|
3.4
|
0.8
|
0.7
|
O4
|
A:TEW607
|
3.4
|
0.4
|
0.7
|
O
|
A:HOH759
|
3.9
|
61.9
|
1.0
|
HZ1
|
A:LYS53
|
4.0
|
0.6
|
1.0
|
O8
|
A:TEW607
|
4.5
|
0.6
|
0.7
|
O23
|
A:TEW607
|
4.5
|
0.5
|
0.7
|
O22
|
A:TEW607
|
4.5
|
0.8
|
0.7
|
O6
|
A:TEW607
|
4.5
|
0.7
|
0.7
|
O19
|
A:TEW607
|
4.5
|
0.5
|
0.7
|
O16
|
A:TEW607
|
4.5
|
0.1
|
0.7
|
O5
|
A:TEW607
|
4.5
|
0.6
|
0.7
|
O31
|
A:TEW607
|
4.5
|
0.7
|
0.7
|
O9
|
A:TEW607
|
4.5
|
0.4
|
0.7
|
O21
|
A:TEW607
|
4.6
|
0.5
|
0.7
|
O15
|
A:TEW607
|
4.6
|
0.2
|
0.7
|
O18
|
A:TEW607
|
4.6
|
0.1
|
0.7
|
HZ3
|
A:LYS53
|
4.7
|
0.6
|
1.0
|
NZ
|
A:LYS53
|
4.8
|
0.3
|
1.0
|
|
Tellurium binding site 3 out
of 3 in 4z12
Go back to
Tellurium Binding Sites List in 4z12
Tellurium binding site 3 out
of 3 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI)
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 3 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) Co-Crystallized with Hexatungstotellurate(VI) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Te609
b:0.9
occ:0.67
|
W
|
B:W610
|
2.1
|
0.2
|
0.7
|
W
|
A:W608
|
3.1
|
0.8
|
0.7
|
W
|
B:W606
|
3.2
|
0.0
|
0.7
|
W
|
B:W605
|
3.3
|
0.7
|
0.7
|
W
|
B:W607
|
3.3
|
0.8
|
0.7
|
HZ3
|
B:LYS352
|
3.5
|
0.3
|
1.0
|
W
|
B:W604
|
3.7
|
0.4
|
0.7
|
O
|
B:HOH909
|
3.7
|
0.8
|
1.0
|
HZ1
|
B:LYS352
|
4.1
|
0.3
|
1.0
|
NZ
|
B:LYS352
|
4.2
|
0.4
|
1.0
|
HD3
|
B:LYS159
|
4.2
|
89.1
|
1.0
|
W
|
B:W608
|
4.2
|
0.7
|
0.7
|
HD2
|
B:LYS159
|
4.6
|
89.1
|
1.0
|
HE2
|
B:LYS352
|
4.7
|
0.5
|
1.0
|
HZ2
|
B:LYS352
|
4.8
|
0.3
|
1.0
|
CD
|
B:LYS159
|
4.9
|
74.3
|
1.0
|
O
|
B:HOH922
|
4.9
|
59.7
|
1.0
|
|
Reference:
C.Molitor,
S.G.Mauracher,
A.Rompel.
Aurone Synthase Is A Catechol Oxidase with Hydroxylase Activity and Provides Insights Into the Mechanism of Plant Polyphenol Oxidases. Proc.Natl.Acad.Sci.Usa V. 113 E1806 2016.
ISSN: ESSN 1091-6490
PubMed: 26976571
DOI: 10.1073/PNAS.1523575113
Page generated: Fri Oct 11 08:59:54 2024
|