Tellurium in PDB 7zsn: Human Purine Nucleoside Phosphorylase in Complex with Js-379
Enzymatic activity of Human Purine Nucleoside Phosphorylase in Complex with Js-379
All present enzymatic activity of Human Purine Nucleoside Phosphorylase in Complex with Js-379:
2.4.2.1;
Protein crystallography data
The structure of Human Purine Nucleoside Phosphorylase in Complex with Js-379, PDB code: 7zsn
was solved by
S.Djukic,
P.Pachl,
P.Rezacova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.01 /
2.36
|
Space group
|
H 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
141.72,
141.72,
162.44,
90,
90,
120
|
R / Rfree (%)
|
22 /
25.9
|
Other elements in 7zsn:
The structure of Human Purine Nucleoside Phosphorylase in Complex with Js-379 also contains other interesting chemical elements:
Tellurium Binding Sites:
The binding sites of Tellurium atom in the Human Purine Nucleoside Phosphorylase in Complex with Js-379
(pdb code 7zsn). This binding sites where shown within
5.0 Angstroms radius around Tellurium atom.
In total 3 binding sites of Tellurium where determined in the
Human Purine Nucleoside Phosphorylase in Complex with Js-379, PDB code: 7zsn:
Jump to Tellurium binding site number:
1;
2;
3;
Tellurium binding site 1 out
of 3 in 7zsn
Go back to
Tellurium Binding Sites List in 7zsn
Tellurium binding site 1 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-379
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 1 of Human Purine Nucleoside Phosphorylase in Complex with Js-379 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te302
b:73.5
occ:0.30
|
TE1
|
A:TEW302
|
0.0
|
73.5
|
0.3
|
O13
|
A:TEW302
|
1.9
|
78.4
|
0.3
|
O2
|
A:TEW302
|
1.9
|
76.2
|
0.3
|
O12
|
A:TEW302
|
1.9
|
71.4
|
0.3
|
O7
|
A:TEW302
|
1.9
|
78.2
|
0.3
|
O11
|
A:TEW302
|
2.0
|
75.2
|
0.3
|
O1
|
A:TEW302
|
2.0
|
78.8
|
0.3
|
W3
|
A:TEW302
|
3.2
|
84.6
|
0.3
|
W4
|
A:TEW302
|
3.3
|
71.4
|
0.3
|
O4
|
A:TEW302
|
3.3
|
83.3
|
0.3
|
O10
|
A:TEW302
|
3.3
|
77.4
|
0.3
|
W2
|
A:TEW302
|
3.4
|
79.1
|
0.3
|
W6
|
A:TEW302
|
3.4
|
80.4
|
0.3
|
W5
|
A:TEW302
|
3.4
|
69.4
|
0.3
|
O14
|
A:TEW302
|
3.4
|
78.6
|
0.3
|
W1
|
A:TEW302
|
3.4
|
83.7
|
0.3
|
O17
|
A:TEW302
|
3.5
|
72.6
|
0.3
|
O20
|
A:TEW302
|
3.5
|
67.2
|
0.3
|
O3
|
A:TEW302
|
3.6
|
79.2
|
0.3
|
O15
|
A:TEW302
|
4.5
|
85.3
|
0.3
|
O16
|
A:TEW302
|
4.5
|
75.6
|
0.3
|
O19
|
A:TEW302
|
4.5
|
74.0
|
0.3
|
O18
|
A:TEW302
|
4.6
|
75.0
|
0.3
|
O22
|
A:TEW302
|
4.6
|
55.7
|
0.3
|
O8
|
A:TEW302
|
4.6
|
81.2
|
0.3
|
O23
|
A:TEW302
|
4.6
|
63.2
|
0.3
|
O31
|
A:TEW302
|
4.6
|
75.4
|
0.3
|
O9
|
A:TEW302
|
4.7
|
82.3
|
0.3
|
O5
|
A:TEW302
|
4.7
|
86.3
|
0.3
|
O6
|
A:TEW302
|
4.7
|
77.1
|
0.3
|
O21
|
A:TEW302
|
4.7
|
62.6
|
0.3
|
|
Tellurium binding site 2 out
of 3 in 7zsn
Go back to
Tellurium Binding Sites List in 7zsn
Tellurium binding site 2 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-379
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 2 of Human Purine Nucleoside Phosphorylase in Complex with Js-379 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te303
b:114.0
occ:0.30
|
TE1
|
A:TEW303
|
0.0
|
114.0
|
0.3
|
O11
|
A:TEW303
|
1.9
|
119.5
|
0.3
|
O2
|
A:TEW303
|
1.9
|
115.5
|
0.3
|
O12
|
A:TEW303
|
1.9
|
119.9
|
0.3
|
O7
|
A:TEW303
|
1.9
|
121.9
|
0.3
|
O13
|
A:TEW303
|
1.9
|
116.1
|
0.3
|
O1
|
A:TEW303
|
1.9
|
118.7
|
0.3
|
W2
|
A:TEW303
|
3.3
|
130.7
|
0.3
|
W6
|
A:TEW303
|
3.3
|
119.8
|
0.3
|
W1
|
A:TEW303
|
3.3
|
107.9
|
0.3
|
W4
|
A:TEW303
|
3.3
|
126.5
|
0.3
|
W5
|
A:TEW303
|
3.3
|
122.6
|
0.3
|
O10
|
A:TEW303
|
3.3
|
124.8
|
0.3
|
W3
|
A:TEW303
|
3.3
|
120.1
|
0.3
|
O20
|
A:TEW303
|
3.4
|
122.3
|
0.3
|
O3
|
A:TEW303
|
3.4
|
119.0
|
0.3
|
O4
|
A:TEW303
|
3.4
|
115.5
|
0.3
|
O14
|
A:TEW303
|
3.5
|
120.1
|
0.3
|
O17
|
A:TEW303
|
3.5
|
121.3
|
0.3
|
O8
|
A:TEW303
|
4.5
|
119.9
|
0.3
|
O5
|
A:TEW303
|
4.5
|
115.9
|
0.3
|
O31
|
A:TEW303
|
4.5
|
117.9
|
0.3
|
O23
|
A:TEW303
|
4.5
|
111.2
|
0.3
|
O19
|
A:TEW303
|
4.5
|
121.0
|
0.3
|
O9
|
A:TEW303
|
4.5
|
122.4
|
0.3
|
O22
|
A:TEW303
|
4.6
|
119.6
|
0.3
|
O6
|
A:TEW303
|
4.6
|
111.5
|
0.3
|
O15
|
A:TEW303
|
4.6
|
113.0
|
0.3
|
O18
|
A:TEW303
|
4.6
|
120.0
|
0.3
|
O16
|
A:TEW303
|
4.6
|
118.9
|
0.3
|
O21
|
A:TEW303
|
4.6
|
121.2
|
0.3
|
|
Tellurium binding site 3 out
of 3 in 7zsn
Go back to
Tellurium Binding Sites List in 7zsn
Tellurium binding site 3 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-379
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 3 of Human Purine Nucleoside Phosphorylase in Complex with Js-379 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te304
b:147.4
occ:0.33
|
TE1
|
A:TEW304
|
0.0
|
147.4
|
0.3
|
O2
|
A:TEW304
|
1.9
|
127.0
|
0.3
|
O13
|
A:TEW304
|
1.9
|
131.9
|
0.3
|
O11
|
A:TEW304
|
1.9
|
145.7
|
0.3
|
O7
|
A:TEW304
|
1.9
|
137.9
|
0.3
|
O1
|
A:TEW304
|
1.9
|
132.3
|
0.3
|
O12
|
A:TEW304
|
1.9
|
142.6
|
0.3
|
W6
|
A:TEW304
|
3.2
|
167.4
|
0.3
|
W1
|
A:TEW304
|
3.2
|
137.5
|
0.3
|
W2
|
A:TEW304
|
3.2
|
132.7
|
0.3
|
W3
|
A:TEW304
|
3.3
|
103.0
|
0.3
|
W5
|
A:TEW304
|
3.3
|
161.5
|
0.3
|
W4
|
A:TEW304
|
3.3
|
138.8
|
0.3
|
O10
|
A:TEW304
|
3.3
|
134.7
|
0.3
|
O3
|
A:TEW304
|
3.4
|
133.2
|
0.3
|
O20
|
A:TEW304
|
3.4
|
147.5
|
0.3
|
O14
|
A:TEW304
|
3.4
|
135.1
|
0.3
|
O4
|
A:TEW304
|
3.4
|
126.6
|
0.3
|
O17
|
A:TEW304
|
3.4
|
143.1
|
0.3
|
CE
|
A:LYS95
|
4.2
|
77.2
|
1.0
|
NZ
|
A:LYS95
|
4.2
|
83.8
|
1.0
|
O31
|
A:TEW304
|
4.4
|
156.7
|
0.3
|
O23
|
A:TEW304
|
4.4
|
148.2
|
0.3
|
O5
|
A:TEW304
|
4.4
|
126.7
|
0.3
|
O8
|
A:TEW304
|
4.4
|
127.5
|
0.3
|
O15
|
A:TEW304
|
4.5
|
119.5
|
0.3
|
O22
|
A:TEW304
|
4.5
|
147.8
|
0.3
|
O19
|
A:TEW304
|
4.5
|
135.5
|
0.3
|
O9
|
A:TEW304
|
4.5
|
131.9
|
0.3
|
O6
|
A:TEW304
|
4.5
|
129.2
|
0.3
|
O16
|
A:TEW304
|
4.5
|
118.7
|
0.3
|
O18
|
A:TEW304
|
4.6
|
141.0
|
0.3
|
O21
|
A:TEW304
|
4.6
|
152.1
|
0.3
|
|
Reference:
J.Skacel,
S.Djukic.
Design, Synthesis, Biological Evaluation, and Crystallographic Study of Novel Pnp Inhibitors To Be Published.
Page generated: Fri Oct 11 09:08:34 2024
|