Tellurium in PDB 7zsp: Human Purine Nucleoside Phosphorylase in Complex with Js-555
Enzymatic activity of Human Purine Nucleoside Phosphorylase in Complex with Js-555
All present enzymatic activity of Human Purine Nucleoside Phosphorylase in Complex with Js-555:
2.4.2.1;
Protein crystallography data
The structure of Human Purine Nucleoside Phosphorylase in Complex with Js-555, PDB code: 7zsp
was solved by
S.Djukic,
P.Pachl,
P.Rezacova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.28 /
2.29
|
Space group
|
H 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
142.36,
142.36,
163.61,
90,
90,
120
|
R / Rfree (%)
|
21.4 /
25.6
|
Other elements in 7zsp:
The structure of Human Purine Nucleoside Phosphorylase in Complex with Js-555 also contains other interesting chemical elements:
Tellurium Binding Sites:
The binding sites of Tellurium atom in the Human Purine Nucleoside Phosphorylase in Complex with Js-555
(pdb code 7zsp). This binding sites where shown within
5.0 Angstroms radius around Tellurium atom.
In total 3 binding sites of Tellurium where determined in the
Human Purine Nucleoside Phosphorylase in Complex with Js-555, PDB code: 7zsp:
Jump to Tellurium binding site number:
1;
2;
3;
Tellurium binding site 1 out
of 3 in 7zsp
Go back to
Tellurium Binding Sites List in 7zsp
Tellurium binding site 1 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-555
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 1 of Human Purine Nucleoside Phosphorylase in Complex with Js-555 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te302
b:159.3
occ:0.33
|
TE1
|
A:TEW302
|
0.0
|
159.3
|
0.3
|
O2
|
A:TEW302
|
1.9
|
139.8
|
0.3
|
O11
|
A:TEW302
|
1.9
|
158.7
|
0.3
|
O13
|
A:TEW302
|
1.9
|
146.6
|
0.3
|
O1
|
A:TEW302
|
1.9
|
146.7
|
0.3
|
O7
|
A:TEW302
|
1.9
|
155.9
|
0.3
|
O12
|
A:TEW302
|
1.9
|
162.7
|
0.3
|
W2
|
A:TEW302
|
3.2
|
136.3
|
0.3
|
W1
|
A:TEW302
|
3.2
|
152.2
|
0.3
|
W6
|
A:TEW302
|
3.3
|
161.0
|
0.3
|
W3
|
A:TEW302
|
3.3
|
113.7
|
0.3
|
W5
|
A:TEW302
|
3.3
|
182.5
|
0.3
|
W4
|
A:TEW302
|
3.3
|
171.9
|
0.3
|
O10
|
A:TEW302
|
3.3
|
153.9
|
0.3
|
O3
|
A:TEW302
|
3.4
|
145.4
|
0.3
|
O20
|
A:TEW302
|
3.4
|
162.3
|
0.3
|
O4
|
A:TEW302
|
3.4
|
139.2
|
0.3
|
O14
|
A:TEW302
|
3.4
|
148.3
|
0.3
|
O17
|
A:TEW302
|
3.4
|
166.3
|
0.3
|
CE
|
A:LYS95
|
4.3
|
77.7
|
1.0
|
NZ
|
A:LYS95
|
4.3
|
87.2
|
1.0
|
O8
|
A:TEW302
|
4.4
|
142.2
|
0.3
|
O5
|
A:TEW302
|
4.4
|
139.4
|
0.3
|
O22
|
A:TEW302
|
4.5
|
169.9
|
0.3
|
O23
|
A:TEW302
|
4.5
|
155.6
|
0.3
|
O15
|
A:TEW302
|
4.5
|
132.4
|
0.3
|
O31
|
A:TEW302
|
4.5
|
160.6
|
0.3
|
O6
|
A:TEW302
|
4.5
|
147.5
|
0.3
|
O16
|
A:TEW302
|
4.5
|
133.8
|
0.3
|
O9
|
A:TEW302
|
4.6
|
146.9
|
0.3
|
O19
|
A:TEW302
|
4.6
|
161.1
|
0.3
|
O21
|
A:TEW302
|
4.6
|
169.3
|
0.3
|
O18
|
A:TEW302
|
4.6
|
165.8
|
0.3
|
|
Tellurium binding site 2 out
of 3 in 7zsp
Go back to
Tellurium Binding Sites List in 7zsp
Tellurium binding site 2 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-555
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 2 of Human Purine Nucleoside Phosphorylase in Complex with Js-555 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te303
b:141.5
occ:0.30
|
TE1
|
A:TEW303
|
0.0
|
141.5
|
0.3
|
O2
|
A:TEW303
|
1.9
|
137.6
|
0.3
|
O12
|
A:TEW303
|
1.9
|
146.3
|
0.3
|
O11
|
A:TEW303
|
1.9
|
147.7
|
0.3
|
O7
|
A:TEW303
|
1.9
|
145.1
|
0.3
|
O13
|
A:TEW303
|
1.9
|
144.6
|
0.3
|
O1
|
A:TEW303
|
1.9
|
138.2
|
0.3
|
W2
|
A:TEW303
|
3.3
|
147.5
|
0.3
|
W1
|
A:TEW303
|
3.3
|
116.0
|
0.3
|
W6
|
A:TEW303
|
3.3
|
150.1
|
0.3
|
W4
|
A:TEW303
|
3.3
|
152.2
|
0.3
|
W5
|
A:TEW303
|
3.3
|
155.0
|
0.3
|
W3
|
A:TEW303
|
3.3
|
146.0
|
0.3
|
O10
|
A:TEW303
|
3.4
|
147.3
|
0.3
|
O3
|
A:TEW303
|
3.4
|
135.8
|
0.3
|
O20
|
A:TEW303
|
3.4
|
150.4
|
0.3
|
O4
|
A:TEW303
|
3.4
|
134.8
|
0.3
|
O17
|
A:TEW303
|
3.5
|
149.1
|
0.3
|
O14
|
A:TEW303
|
3.5
|
147.1
|
0.3
|
O8
|
A:TEW303
|
4.5
|
138.6
|
0.3
|
O5
|
A:TEW303
|
4.5
|
126.5
|
0.3
|
O22
|
A:TEW303
|
4.5
|
148.0
|
0.3
|
O19
|
A:TEW303
|
4.6
|
143.9
|
0.3
|
O31
|
A:TEW303
|
4.6
|
148.1
|
0.3
|
O9
|
A:TEW303
|
4.6
|
139.0
|
0.3
|
O23
|
A:TEW303
|
4.6
|
142.3
|
0.3
|
O6
|
A:TEW303
|
4.6
|
125.2
|
0.3
|
O15
|
A:TEW303
|
4.6
|
140.1
|
0.3
|
O18
|
A:TEW303
|
4.6
|
142.7
|
0.3
|
O16
|
A:TEW303
|
4.6
|
140.1
|
0.3
|
O21
|
A:TEW303
|
4.6
|
148.6
|
0.3
|
|
Tellurium binding site 3 out
of 3 in 7zsp
Go back to
Tellurium Binding Sites List in 7zsp
Tellurium binding site 3 out
of 3 in the Human Purine Nucleoside Phosphorylase in Complex with Js-555
Mono view
Stereo pair view
|
A full contact list of Tellurium with other atoms in the Te binding
site number 3 of Human Purine Nucleoside Phosphorylase in Complex with Js-555 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Te304
b:78.1
occ:0.34
|
TE1
|
A:TEW304
|
0.0
|
78.1
|
0.3
|
O13
|
A:TEW304
|
1.9
|
84.0
|
0.3
|
O2
|
A:TEW304
|
1.9
|
75.5
|
0.3
|
O1
|
A:TEW304
|
1.9
|
71.8
|
0.3
|
O11
|
A:TEW304
|
1.9
|
84.4
|
0.3
|
O7
|
A:TEW304
|
1.9
|
70.5
|
0.3
|
O12
|
A:TEW304
|
1.9
|
85.8
|
0.3
|
W6
|
A:TEW304
|
3.1
|
101.8
|
0.3
|
W2
|
A:TEW304
|
3.2
|
60.7
|
0.3
|
W1
|
A:TEW304
|
3.2
|
61.0
|
0.3
|
O20
|
A:TEW304
|
3.2
|
91.7
|
0.3
|
W4
|
A:TEW304
|
3.3
|
86.6
|
0.3
|
W3
|
A:TEW304
|
3.3
|
95.7
|
0.3
|
O14
|
A:TEW304
|
3.3
|
90.3
|
0.3
|
W5
|
A:TEW304
|
3.3
|
84.6
|
0.3
|
O3
|
A:TEW304
|
3.3
|
70.1
|
0.3
|
O10
|
A:TEW304
|
3.4
|
76.8
|
0.3
|
O4
|
A:TEW304
|
3.4
|
72.9
|
0.3
|
O17
|
A:TEW304
|
3.6
|
85.4
|
0.3
|
O23
|
A:TEW304
|
4.4
|
95.1
|
0.3
|
O8
|
A:TEW304
|
4.4
|
65.7
|
0.3
|
O31
|
A:TEW304
|
4.4
|
93.8
|
0.3
|
O19
|
A:TEW304
|
4.5
|
92.4
|
0.3
|
O21
|
A:TEW304
|
4.5
|
82.6
|
0.3
|
O5
|
A:TEW304
|
4.5
|
64.3
|
0.3
|
O9
|
A:TEW304
|
4.5
|
70.7
|
0.3
|
O6
|
A:TEW304
|
4.5
|
66.5
|
0.3
|
O15
|
A:TEW304
|
4.5
|
80.8
|
0.3
|
O16
|
A:TEW304
|
4.6
|
78.3
|
0.3
|
O22
|
A:TEW304
|
4.6
|
82.5
|
0.3
|
O18
|
A:TEW304
|
4.6
|
87.1
|
0.3
|
|
Reference:
J.Skacel,
S.Djukic.
Design, Synthesis, Biological Evaluation, and Crystallographic Study of Novel Pnp Inhibitors To Be Published.
Page generated: Fri Oct 11 09:08:34 2024
|